An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Download Center


Welcome to the download center supported by NONCODE!
This is an Open data distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. If you are commercial user, please contact us:  

Seqeunces of NONOCDEv6

SpeciesDownload AddressMD5
HumanNONCODEv6_human.fa.gz71eb68530792def450bc436b43e97513
MouseNONCODEv6_mouse.fa.gz9c2e5402dceed16d02f74270c222e3f7
CowNONCODEv6_cow.fa.gz4e1c36b1774b40dc8c49fafe8e7fa69f
RatNONCODEv6_rat.fa.gz3e5eb5bddc88d2473383343ee8e2b9fb
ChickenNONCODEv6_chicken.fa.gzd771fa576e6dd386e24c585192bb737c
C.ElegansNONCODEv6_celegans.fa.gz73c8c2c671b61c2806147cead6965fc6
D.MelanogasterNONCODEv6_fruitfly.fa.gz90711cd04f73ec8791b39e623ab1360d
ZebrafishNONCODEv6_zebrafish.fa.gz7c915acbb26c83d89bbf54c8345bbdd5
YeastNONCODEv6_yeast.fa.gz3f068ec1671cd6865d21b93df5ac4835
ChimpNONCODEv6_chimp.fa.gz349ae801226a52f015ad5230b0373800
GorillaNONCODEv6_gorilla.fa.gz81c6bb93ac866554f0c9a27407c94e2a
OrangutanNONCODEv6_orangutan.fa.gz58dff623e05c0b1364b226dabc34fce9
RhesusNONCODEv6_rhesus.fa.gzfa110411a7e83777b0703586e691da7f
OpossumNONCODEv6_opossum.fa.gz11cfab7b60185e48876013e17e5c9a4b
PlatypusNONCODEv6_platypus.fa.gz15aec74194aa0e2f94d86b49ce0d3ae8
PigNONCODEv6_pig.fa.gz09694f22b454a1598f167f9f92c1ea7b
A. thalianaNONCODEv6_ATH.fa.gz2f60b2477d7dc1c2a7297ba95c503498
B. napusNONCODEv6_BNA.fa.gzc33effdf4835e3d7a9ea2b65feda741b
B. rapaNONCODEv6_BRA.fa.gzf94af0c5060fea5d1def323bef76beb5
QuinoaNONCODEv6_CQU.fa.gz55a414bd0046d01a94c679a188182a68
C. reinhardtiiNONCODEv6_CRE.fa.gz86bee847aeebc3228769809e28c03acf
CucumberNONCODEv6_CSA.fa.gz38b771e3935adda2db635d8f34227262
SoybeanNONCODEv6_GMA.fa.gzec75c1b40c40fe520c86361a3f5322b3
G. raimondiiNONCODEv6_GRA.fa.gz6681f8d8a9077673d3b4aecdaccd57d5
AppleNONCODEv6_MAL.fa.gzc03eb096cc55fb08c63d5a234ecbdae1
CassavaNONCODEv6_MES.fa.gz25639acfea930838106264ebde2eed98
M. truncatulaNONCODEv6_MTR.fa.gz73d7f0d98607e32a04cd73d0c34a75b8
BananaNONCODEv6_MAC.fa.gzecb28e75ca2d663a5eb140bfd47a98a4
O. rufipogonNONCODEv6_ORU.fa.gz57939cd894e4de1d68aa85ad38aa449d
O. sativaNONCODEv6_OSA.fa.gzdc1dc78025be549b7d05d926335d8be3
P. patensNONCODEv6_PPA.fa.gze0597ada0b3b278a2d5b72a89469da59
P. trichocarpaNONCODEv6_POP.fa.gzfa6923e167ca129b7dd393b129792aa1
TomatoNONCODEv6_SLY.fa.gze123ff3b1c0af350cac4442b17460b44
PotatoNONCODEv6_STU.fa.gzbf1ed9a86b755653fc7bcd4247203052
CacaoNONCODEv6_TCA.fa.gz4bc428a653fd9e26e82104791bb6628a
TrefoilNONCODEv6_TPR.fa.gz8db31c041e10e4d31fc40ce28c28f0a0
WheatNONCODEv6_TAE.fa.gz9fe60b752bd46989f4f2d8f4ba743a63
GrapeNONCODEv6_VVI.fa.gz388b9f6ac8af5d0bcbcbca97187e7ef2
MaizeNONCODEv6_ZMA.fa.gz234c8b3940319a42c821e734f6e98211

LncRNA and LncRNA Genes(Bed Format) of NONCODEv6

SpeciesDownload AddressMD5
HumanNONCODEv6_hg38.lncAndGene.bed.gz99de4e0d68a2dc79fad62bfb6c7e6678
MouseNONCODEv6_mm10.lncAndGene.bed.gz7764c60f557c2510093453025ce8b2d1
A. thalianaATH.NONCODEv6.lnc.bed.gz1d217181e4d23144420730a797356a49
B. napusBNA.NONCODEv6.lnc.bed.gz63848a96f5bf08332ad6d3fb38ec18a2
B. rapaBRA.NONCODEv6.lnc.bed.gz7f644c3870c77bffe66f05e71c0a5a34
QuinoaCQU.NONCODEv6.lnc.bed.gzbbccf2ea9e9c45f9039dc36d3e595782
C. reinhardtiiCRE.NONCODEv6.lnc.bed.gzfb3524d66af24d452390fcdcb2d117fa
CucumberCSA.NONCODEv6.lnc.bed.gz4b17c7a0deec1dba79f2c346aed59405
SoybeanGMA.NONCODEv6.lnc.bed.gze0b88191aaeeac099fa4f0ff32daecbb
G. raimondiiGRA.NONCODEv6.lnc.bed.gzdcc14ab367dfcd891f72c3e8cb06a780
AppleMAL.NONCODEv6.lnc.bed.gz12f8fed495d5bb4b62cffa259c47b58c
CassavaMES.NONCODEv6.lnc.bed.gz2d5a09f54d5f005ca9d2e35e1540d2b2
M. truncatulaMTR.NONCODEv6.lnc.bed.gzc81a94924e83fb5398460a662ea66e23
BananaMAC.NONCODEv6.lnc.bed.gza7f679c86a063d797c5f092a86177013
O. rufipogonORU.NONCODEv6.lnc.bed.gz728a39d2a484fa775e5c41dcfd233f45
O. sativaOSA.NONCODEv6.lnc.bed.gz646d5d37756da379c0452d23a50b0ab5
P. patensPPA.NONCODEv6.lnc.bed.gz41656c1a7a814f2d5baba11533a1f17a
P. trichocarpaPOP.NONCODEv6.lnc.bed.gz5059e2a224380fc4c604a37c08424a9a
TomatoSLY.NONCODEv6.lnc.bed.gz31be6a7da28c00b7cb8d98e770892c5c
PotatoSTU.NONCODEv6.lnc.bed.gz3dd8b0a597a43b034dd0dd7709baa85e
CacaoTCA.NONCODEv6.lnc.bed.gzb965f2e67f82715c362a15fac22c66bb
TrefoilTPR.NONCODEv6.lnc.bed.gz0e5159e46351a650e9dfcafb5c642d03
WheatTAE.NONCODEv6.lnc.bed.gz31776e7e2f22f0b21b620dcd241b7b49
GrapeVVI.NONCODEv6.lnc.bed.gz7c3ca855171ce4c51c8bb09f58c3055d
MaizeZMA.NONCODEv6.lnc.bed.gz1f6e1b14a46355e2bbc2d2fad7a33082

Other tables for NONCODE

DataDownload AddressMD5
Novel LncRNA in human T cellsNovel_lncRNA_in_T_cells.gtf.gzfa06f1137328fff152a49c0352f34b7c

This following links provide all the ncRNA data (in fasta format) in earlier versions of NONCODE.


ncRNA in NONCODE v5.0
zip file (windows version): ncrna_NONCODE[v5.0].fasta.zip ab80607f5ca69240525328a9105651cd
zip file (linux version): ncrna_NONCODE[v5.0].fasta.tar.gz 5a56f86094491fbb49e7c5db415c0893
ncRNA in NONCODE 2016
zip file (windows version): ncrna_NONCODE2016.fasta.zip 3b7e310122e76758de42482dbc7969a5
zip file (linux version): ncrna_NONCODE2016.fasta.tar.gz cbd1d1ed4b6116f592760e4ecfec7a36
ncRNA in NONCODE v4.0
zip file (windows version): ncrna_NONCODE[v4.0].fasta.zip ecf9c3e12bb6ed856ba0477a13b68463
zip file (linux version): ncrna_NONCODE[v4.0].fasta.tar.gz 46c8a992c9a7d1cee3473a89f475f20a
ncRNA in NONCODE v3.0
zip file (windows version): ncrna_NONCODE[v3.0].fasta.zip 6853946c150a38a3b62a7f81bc75f42e
zip file (linux version): ncrna_NONCODE[v3.0].fasta.tar.gz 4c2da91a262087bb0ef34e40fae2d430
ncRNA in NONCODE v2.0
zip file (windows version):ncrna_NONCODE[v2.0].fasta.zip aba3aa00aa3c4b3eb39b105717e7cc69
zip file (linux version):ncrna_NONCODE[v2.0].fasta.tar.gz 87129711c942a012f7dc87831049ee14
ncRNA in NONCODE v1.0
zip file (windows version):ncrna_NONCODE[v1.0].fasta.zip e1c5fb76ddf0b02835041a23169cc263
zip file (linux version): ncrna_NONCODE[v1.0].fasta.tar.gz 8002f0b1cd16c12fc5127e484057bde1